fastqc.RdThis function calls
fastqc using
system2(). To run in parallel, register a parallel backend using
doFuture::registerDoFuture() or doParallel::registerDoParallel().
fastqc(filepaths, outputDir = "fastqc_output", cmd = "fastqc", args = NULL)
| filepaths | Paths to fastq files. For single-end reads, each element should be a single filepath. For paired-end reads, each element can be two filepaths separated by ";". |
|---|---|
| outputDir | Directory in which to store output. Will be created if it doesn't exist. |
| cmd | Name or path of the command-line interface. |
| args | Additional arguments to pass to the command-line interface. |
A vector of exit codes, invisibly.