Run MultiQC

This function calls multiqc using system2().

multiqc(
  parentDir = ".",
  outputDir = "multiqc_output",
  cmd = "multiqc",
  args = NULL
)

Arguments

parentDir

Directory that contains output to be aggregated.
outputDir

Directory in which to store output. Will be created if it doesn't exist.
cmd

Name or path of the command-line interface.
args

Additional arguments to pass to the command-line interface.

Value

An exit code, invisibly.